Bioinformatics Scientist II

Bioinformatics Scientist IIThe Bioinformatics Scientist II develops and supports clinical trial and companion diagnostics (CDx) biomarker strategy through advanced analytical and scientific contributions. This role applies bioinformatics and cancer biology expertise to contribute to biomarker rule development, analytical methods, and workflow components that support consistent, scalable clinical reporting.The incumbent provides scientific, technical, and directional contributions for designated projects on an interdisciplinary team focused on making a clinical impact through advanced analysis at large scale. The Bioinformatics Scientist II is also responsible for supporting novel biomarker and companion diagnostics development by mining and analyzing various types of data generated during the product development and validation process.Key Responsibilities:Partners within an interdisciplinary team of Bioinformatics Scientists, Biostatisticians, Laboratory Scientists, Regulatory experts, and other teams to support the development and implementation of biomarker strategy for clinical trials and CDxContributes to biomarker implementation by supporting rule development and technical execution across studiesLeads biomarker scoping for individual studies by evaluating feasibility of biomarker definitions, performing data analyses to inform decisions, and providing technical input in partner-facing scoping discussionsIdentifies opportunities to improve existing biomarker workflows and documentation, and provides technical input to enhance quality and efficiencyContributes to development, refinement, and consistent application of biomarker guidance across studiesContributes scientific input to biomarker strategy discussions and evaluates feasibility across studiesDevelops and executes analytical and validation approaches for biomarker analysesExecutes analytical work in support of product development, including method development, feasibility assessment, and evaluation of biomarker applicabilityProvides technical input to biopharma partner-specific discussions related to biomarker analyses and implementationProvides technical input to regulatory documentation and participates in regulatory discussions related to biomarker analysesContributes to biomarker inquiry support by independently resolving standard inquiries, performing analyses, and assisting with triage and documentation of incoming questionsContributes to and improves shared tools and datasets, ensuring they are accurate, reusable, and well-documentedMentors Scientist I team members and supports team coordination and documentation needsPresents scientific and technical data to colleagues in a clear and cohesive mannerOther duties as assignedComply with FMI's attendance policiesQualifications:Basic Qualifications:Master's degree in Biochemistry, Bioinformatics, Computational Biology, Computer Science or similar discipline2+ years of relevant industry or academic experienceProficiency with scripting for data analysis using Python, R, or similarPreferred Qualifications:PhD degree in Biochemistry, Bioinformatics, Computational Biology, Computer Science or similar discipline3+ years of industry experienceStrong scientific understanding of molecular biology and genomicsExperience in cancer research, including a working understanding of computational approaches for cancer genome analysisKnowledge of predictive biomarkers for cancer therapyKnowledge of clinical trial and CDx biomarker strategy, processes, and requirementsKnowledge and experience with Next-Generation Sequencing (NGS)Strong analytical skills with experience in genomic data analysisDemonstrated ability to work independently and contribute to team projectsAbility to work in a multidisciplinary, fast-paced, dynamic, and results-oriented environmentUnderstanding of HIPAA and the importance of patient data privacyCommitment to reflect FMI's values: Integrity, Courage, and PassionThe expected salary range for this position based on the primary location of Boston, MA is $129,840 - $162,300 per year. The salary range is commensurate with Foundation Medicines compensation practice and considers factors including, but not limited to, education, training, experience, external market conditions, criticality of role, and internal equity. A discretionary annual bonus may be available based on individual and Company performance. This position also qualifies for Foundation Medicine's benefits.