Sr. Bioinformatics Scientist

Overview Veracyte is a global diagnostics company transforming cancer care for patients worldwide. The Bioinformatics Scientist will join the Bioinformatics and Data Science Team to develop regulated diagnostics products. The role requires deep expertise in NGS technologies, an understanding of regulatory environments including CAP/CLIA and IVD product development, and the ability to design, develop, and optimize genomic assays to provide actionable insights. Responsibilities Lead bioinformatics design, development and validation efforts in assay development for new and on-market products. Coordinate planning, execution, and delivery within timelines and budget constraints as part of project core teams. Apply advanced knowledge in bioinformatics, genomics, and assay technologies to contribute to development principles and achieve assay development objectives. Drive study design and all analysis for assay development in collaboration with cross-functional teams. Develop statistical and machine learning techniques to evaluate assay performance and create optimization strategies. Communicate analysis results, methodologies, and scientific findings to internal teams, external collaborators, and stakeholders. Develop scalable, production-grade workflows for high-throughput NGS data analysis using AWS and containerized environments. Facilitate successful production pipeline deployment by working with infrastructure and engineering teams. Ensure compliance with regulatory standards (CAP/CLIA, FDA, IVDR) throughout the bioinformatics development lifecycle, including rigorous testing and documentation. Contribute to regulatory submissions and audits by providing technical documentation and validation reports. Provide scientific guidance and mentorship to junior bioinformatics team members. Qualifications REQUIRED EXPERIENCE: PhD or MS in bioinformatics, computational biology, or related field (e.g., biostatistics, statistics, computer science). 6–7+ years of experience in bioinformatics analysis, algorithm development, and pipeline implementation. Strong understanding of NGS technologies and library preparation methods (WGS, enrichment, RNA-Seq, methylation, etc.). Proficiency in quantitative transcriptomics from NGS or expression microarray data in human disease contexts (differential expression, dimension reduction, expression-based classifier development, RNA-based signatures, cell type deconvolution). Proficiency in machine learning and development of novel bioinformatics methodologies and algorithms, including benchmarking of methods. Experience deploying bioinformatics workflows in AWS (EC2, S3, Step Functions, Batch, Lambda, etc.). Strong Python proficiency, including testing frameworks and SDLC best practices. Experience collaborating with Quality and Regulatory Affairs on assay and analysis pipeline development and verification. Demonstrated technical and scientific leadership, ownership, and ability to work independently. RELEVANT EXPERIENCE (preferred but not required): Experience working with wet lab scientists on iterative experimental design, execution, analysis, and interpretation as part of an integrated team. Proficiency in genomics, sequence analysis, and secondary analysis (variant calling, NGS QC, splicing, circular nucleic acids). Understanding of germline and somatic mutation processes and genome-wide biomarkers with potential clinical utility (e.g., TMB, mutational signatures, LOH). Working knowledge of R. Experience with relational and non-relational database technologies is a plus. Ability to communicate complex technical topics using data visualizations and diagrams. Strong technical problem-solving and troubleshooting skills. CULTURAL FIT: Passion for Innovation : Curiosity and drive to explore genomics, using novel analytical approaches to improve assay optimization and evaluation. Collaborative Spirit : Ability to work in a collaborative environment, communicate with non-experts, and foster an inclusive atmosphere. Adaptability : Ability to adapt to a fast-paced industry, pivot strategies with new data or technologies, and remain resilient. Salary details: The final salary offered will depend on experience, skillset, location, and other factors. Base pay is part of the total package and may include discretionary bonuses and restricted stock units. Pay range : $175,000 — $190,000 USD What We Can Offer You Veracyte offers competitive compensation and benefits, with a focus on fostering an inclusive workforce. The company is recognized as a 2024 Certified Great Place to Work in the US and Israel. About Veracyte Veracyte (Nasdaq: VCYT) is a global diagnostics company whose vision is to transform cancer care. Our platform delivers high-performing tests powered by broad genomic and clinical data, deep bioinformatic and AI capabilities, and an evidence-generation engine to drive reimbursement and guideline inclusion. For more information, visit Veracyte’s website and follow us on social media. Veracyte is an Equal Opportunity Employer and participates in E-Verify. View our CCPA Disclosure Notice. #J-18808-Ljbffr