Principal Scientist — Synthetic Chemist / Peptide Therapeutics (Indianapolis)
$65.25k - $169.4kEli Lilly & Co
At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of disease, and give back to our communities through philanthropy and volunteerism. We give our best effort to our work, and we put people first. We’re looking for people who are determined to make life better for people around the world.This is a lab-based position in the Peptide Therapeutics Team within Biotechnology Discovery Research in Indianapolis. The individual will synthesize, purify, characterize, and optimize therapeutic peptides and bioconjugates in support of preclinical drug discovery and development efforts. This role requires a skilled bench scientist who contributes meaningfully to structure-activity relationship (SAR) campaigns — not only generating target molecules but also analyzing data, interpreting results, and making design recommendations that help advance projects from concept toward candidate selection.The individual will work closely with fellow chemists and cross-functional partners across such areas as Discovery Chemistry, Genetic Medicines, Therapeutic Area teams, ADME, and Bioproduct Development. Skilled synthetic chemists with limited peptide chemistry experience and deeper expertise in areas such as small molecules, oligonucleotides, or protein conjugation are welcome to apply.**KEY OBJECTIVES/DELIVERABLES:*** **Synthesis & SAR Contribution:** Utilize state-of-the-art synthesis techniques to drive compound generation, including peptide synthesis, purification, and characterization. Propose alternative synthetic strategies and overcome synthetic challenges. Analyze and interpret structure-activity relationships to make informed design recommendations that move projects forward.* **Data Integration & Problem-Solving:** Apply a data-driven approach to experimental planning. Search and integrate relevant chemical and scientific literature to inform design choices. Develop growing expertise in areas such as physicochemical characterization and pharmaceutical developability as they relate to peptide optimization.* **Cross-Functional Collaboration:** Collaborate effectively with chemists, biologists, and scientists from other disciplines and drug modalities in a team-oriented environment. Communicate results clearly through verbal presentations, written reports, and accurate documentation of experimental procedures. Contribute to an inclusive and supportive team culture.* **Scientific Growth & Engagement:** Demonstrate a desire to understand how bench work connects to broader drug discovery goals. Stay current with relevant literature and bring new ideas to the group. Seek out opportunities to expand technical capabilities and take on diverse scientific challenges as they arise.**MINIMUM REQUIREMENTS:*** B.S. in chemistry or a related field with at least 5 years of experience, OR M.S. in chemistry or a related field with at least 3 years of experience.* A comprehensive understanding of synthetic peptide chemistry and/or organic chemistry.* *Qualified applicants must be authorized to work in the United States on a full-time basis. Lilly will not provide support for or sponsor work authorization or visas for this role, including but not limited to F-1 CPT, F-1 OPT, F-1 STEM OPT, J-1, H-1B, TN, O-1, E-3, H-1B1, or L-1.***ADDITIONAL PREFERENCES:*** Experience with peptide synthesis instrumentation, purification, and analysis by HPLC and mass spectrometry. Skilled synthetic organic chemists with a desire to transition to peptide therapeutics are encouraged to apply.* Experience with bioconjugation chemistry (e.g., conjugation of small molecules, oligonucleotides, carbohydrates, fluorescent labels, and/or proteins to synthetic peptides or other modalities).* Familiarity with macrocyclic peptide synthesis, characterization, or optimization.* Familiarity with computational methods for structure-based drug design.* Strong communication, organizational, and interpersonal skills, with the ability to work effectively as part of diverse cross-functional teams.* An eagerness to present work and understand its impact on drug discovery efforts.Lilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions. If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form () for further assistance. Please note this is for individuals to request an accommodation as part of the application process and any other correspondence will not receive a response.Lilly is proud to be an EEO Employer and does not discriminate on the basis of age, race, color, religion, gender identity, sex, gender expression, sexual orientation, genetic information, ancestry, national origin, protected veteran status, disability, or any other legally protected status.Our employee resource groups (ERGs) offer strong support networks for their members and are open to all employees. Our current groups include: Africa, Middle East, Central Asia Network, Black Employees at Lilly, Chinese Culture Network, Japanese International Leadership Network (JILN), Lilly India Network, Organization of Latinx at Lilly (OLA), PRIDE (LGBTQ+ Allies), Veterans Leadership Network (VLN), Women’s Initiative for Leading at Lilly (WILL), enAble (for people with disabilities). Learn more about all of our groups.Actual compensation will depend on a candidate’s education, experience, skills, and geographic location. The anticipated wage for this position is$65,250 - $169,400### Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly’s compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees.#WeAreLillyAt Lilly we strive to ensure our employees are part of a team that cares about them and our shared purpose of making life better for those around the world. We hope that you seek to join us on our journey as we create medicine and deliver improved outcomes for patients across the globe! #J-18808-Ljbffr Eli Lilly and Company
$126k - $204.6k
...healthcare leader headquartered in Indianapolis, Indiana. Our employees... ...scientific position in the Peptide Therapeutics Team within Biotechnology... ...role requires a hands‑on scientist who will lead from the bench... ..., bioconjugation, or synthetic organic chemistry. 0-3 years...SuggestedFull timeFlexible hours- A pharmaceutical company in Indianapolis is seeking a skilled bench scientist to join their Biotechnology Discovery... ...purifying, and characterizing therapeutic peptides, contributing to preclinical... ...should have a strong background in synthetic peptide chemistry with at least...Suggested
$132k - $193.6k
A leading global healthcare firm is looking for a Scientist/Senior Principal Scientist in Indianapolis to support small molecule therapeutics. The role involves developing bioanalytical methods, conducting metabolite identification, and mentoring junior scientists. Candidates...Principal$132k - $193.6k
Initial Therapeutics, Inc. in Indianapolis seeks a Scientist/Sr Principal for bioanalytical research. This role involves developing and validating LC-MS/MS methods, metabolite identification, and collaborating with cross-functional teams. Candidates should have over 7 years...Principal$65.25k - $169.4k
...healthcare leader headquartered in Indianapolis, Indiana. Our employees... ...of biologic therapeutics such as mAbs and bioconjugates... ...conjugates (ADCs), antibody-peptide conjugates (APCs), and antibody... ...AOCs). We collaborate with our Synthetic Molecule Design and Development...PrincipalFull timeH1bVisa sponsorshipWork visaFlexible hours$30 - $35 per hour
...Location:550 W 16th St Ste B Indianapolis, IN 46202 Consultant... ...quantitative analysis Chemist in the Chemistry... ...$185,000.00 1 week ago Principal Scientist, TSMS Small Molecule Synthesis... ...) - ADN RAMP Team Synthetic Chemist - Peptide Therapeutics (Indianapolis, IN) Advisor...Contract workWork experience placementLocal area- Synthetic Chemist High Potency Lab - Lilly Medicine Foundry page is loaded## Synthetic Chemist... ...Foundrylocations: US, Lebanon IN: US: Indianapolis IN Parkwood Westtime type: Full timeposted... ...synthetic molecules, biologics, peptides, oligonucleotide, and bioconjugates (ADC...Permanent employment
- Principal Scientist - Process Translation and Execution Lilly Medicine... ...: US, Lebanon IN: US: Indianapolis IN Parkwood Westtime... ...modalities, including synthetic molecules, biologics, peptides, oligonucleotide, and bioconjugates... ...passionate and agile chemists to join the PTE team...PrincipalPermanent employmentFull timeH1bVisa sponsorshipWork visaNight shift
$64.5k - $167.2k
...you can apply for a job. Principal Scientist, TSMS Small Molecule Synthesis... ...leader headquartered in Indianapolis, Indiana. Our employees... ...challenges for new small molecule/synthetic active pharmaceutical... ...$64,500 - $167,200. #J-18808-Ljbffr Initial Therapeutics, Inc.PrincipalTemporary workLocal areaRelocationFlexible hoursShift work$63k - $162.8k
...global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the... ...world. Position Brand Description: The Chemist - QC - IAPI (QC eSystems) provides electronic... ...or transfer of Lilly employees. #WeAreLilly #J-18808-Ljbffr Initial Therapeutics, Inc.PrincipalFull timeFlexible hours- A leading healthcare research organization in Indianapolis is seeking a highly motivated computational chemist to apply physics-based modeling and cheminformatics... ...design of chemically modified oligonucleotide therapeutics. Responsibilities include performing molecular dynamics...
- ...global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the... ...around the world. The Digital Research Scientist role in Network TS/MS will be responsible... ...questions of peers to get to the best solution. #J-18808-Ljbffr Initial Therapeutics, Inc.PrincipalLocal area
$132k - $193.6k
Scientist / Sr Principal, Bioanalytical Research Location: Indianapolis, IN Function: iADMET-BAR Lilly's iADMET-BAR (Investigative ADMET, Toxicology, and Bioanalytical... ...programs focused on small molecule therapeutics. The role encompasses quantitative bioanalysis...PrincipalFull timeH1bVisa sponsorshipWork visaFlexible hours$65.25k - $193.6k
...Research Group (BAR) at Lilly’s research facility in Indianapolis, IN is seeking a strong scientist skilled in protein and oligonucleotide mass... ...innovative ways in our evaluation of the ADME properties of therapeutic proteins and genetic medicine modalities. The team collaborates...PrincipalFull timeWork experience placementH1bVisa sponsorshipWork visaFlexible hours- Our client, leading leader in biotechnology and diagnostics, is looking for Chemist/Scientist based out of Indianapolis, IN . If you are interested in discussing further, please review the details below. Duration: Long term contract (Possibility of further extension)...Long term contractWork experience placement
$30 per hour
...Job Description Job Description Job Title: Medical Lab Scientist I Location: 1500 Ritter Ave, Indianapolis IN 46219 Available Shifts: 6:00am - 2:30pm (Days vary) 8:00am - 4:30pm (Days vary) 10:00pm - 6:30am (Days vary) Starting Pay Rate: $30.00 / Hourly...Hourly payShift work- ...our team today! Your Role: Senior / Principal Scientist, Downstream Process Development The Biopharma... ...Development team located in Indianapolis, IN is seeking a Senior / Principal Research... ...emphasis on monoclonal antibodies, therapeutic proteins, and other biological...PrincipalSummer workRelocationFlexible hours
- Eli Lilly and Company is seeking a Synthetic Chemist for the Lilly Medicine Foundry in Indianapolis, Indiana. This role focuses on evaluating and facilitating the transfer of chemical processes for highly potent molecules. Candidates should have a B.S. or M.S. in chemistry...
- Principal Research Scientist/Research Advisor-Analytical Development Full-time Pharmaceutical / Biotech Responsibilities: The Principal Research... ...- Doctorate Degree Additional Details: Location: Indianapolis Industry: Pharmaceutical/Biotech Job Category: Research &...PrincipalFull time
- ...Position - Sr Data Scientist Location : Indianapolis, IN Rate - DOE Start Date - ASAP Project Description: The candidate must have experience and fundamental knowledge in machine learning, experience in deploying models, and programming skills to develop...Immediate start
$66k - $171.6k
...Technical Scientist, TS/MS Pilot Plant At Lilly, we unite caring with discovery to make... ...healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world... ...substances to supply clinical trials, utilizing peptide synthesis and purification platforms...- ...company emphasizes growth, opportunities, and a collaborative environment. Job Posting Title: Senior Therapeutic Area Specialist, Cardiovascular Specialty - Indianapolis N, IN Therapeutic Area (TA): Cardiovascular Primary Location: Field - United States Primary Job...
- A leading animal health company in Indianapolis is seeking a Sr. Associate/Consultant for their Biopharma Formulations team. The role involves the development of robust formulations for biopharmaceutical products, focusing on monoclonal antibodies and proteins. The ideal...
$90k - $130k
CPS, Inc. is seeking a Food Scientist to join their R&D team onsite in Indianapolis, IN. This role involves full-cycle product development focusing on commercialization and cost savings. Candidates should have a BS in Food Science (or related) and 3-5 years of experience...$65.25k - $148.5k
Senior Scientist, Bioprocess Purification Development page is loaded## Senior Scientist, Bioprocess Purification Developmentlocations: US, Indianapolis INtime type: Full timeposted on: Posted 2 Days Agotime left to apply: End Date: April 24, 2026 (4 days left to apply)...PrincipalFull timeH1bVisa sponsorshipWork visaFlexible hours$65.25k - $169.4k
...the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and... ...philanthropy and volunteerism. Position Description The Scientist - Quality Operations is responsible for assuring and verifying...PrincipalFull timeH1bLocal areaVisa sponsorshipWork visaFlexible hoursShift work- ...Job Opportunity Indianapolis, IN Secret Polygraph Unspecified Career Level not specified Salary not specified Join Premium to unlock estimated salaries Job Description Job Responsibilities: Follow the laboratory's procedures for specimen handling and processing...Work experience placementImmediate start
- Principal Research Scientist page is loaded## Principal Research Scientistlocations: Indianapolis, INtime type: Full timeposted on: Posted Todayjob requisition id: R0025248**At Elanco (NYSE: ELAN) - it all starts with animals!****As a global leader in animal health, we...PrincipalContract workSummer workLocal areaRelocationFlexible hours
$24 - $28 per hour
...data generation as outlined by the principal investigators for the Regulatory... ...to set job alerts for “Analytical Chemist” roles. Indianapolis, IN $85,400.00-$158,600.00 3 days... ...45,000.00 1 day ago Manufacturing Scientist - LP1 Peptide Synthesis Indianapolis, IN $63,000...Contract work- Associate Scientist Chemistry Research page is loaded## Associate Scientist Chemistry Researchlocations: Indianapolis, INtime type: Full timeposted on: Posted Todayjob requisition id: R-1427The Heritage Group is a fourth-generation, family-owned business focused on construction...Full timeInternshipWork at officeRelocation
Do you want to receive more vacancies?
Subscribe and receive similar vacancies to Principal Scientist — Synthetic Chemist / Peptide Therapeutics (Indianapolis). Be the first to apply!
- scientist biology Indianapolis, IN
- scientist immunology Indianapolis, IN
- associate scientist Indianapolis, IN
- graduate scientist Indianapolis, IN
- hplc scientist Indianapolis, IN
- validation scientist Indianapolis, IN
- downstream processing scientist Indianapolis, IN
- scientist antibody discovery Indianapolis, IN
- health scientist Indianapolis, IN
- applied sports scientist Indianapolis, IN


