Postdoctoral Associate - Human Genetics

On-Site

Miami, FL

Full time

R100101052

Current Employees:

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CORE JOB SUMMARYThe Post Doctoral Associate performs scientific research and studies under the supervision of managing staff. Moreover, the Post Doctoral Associate promotes institutional recognition through literal contributions to the scientific community.CORE JOB FUNCTIONS1. Conducts research on specific areas of study as assigned.2. Prepares research reports and technical papers for publishing.3. Investigates the feasibility of applying a wide variety of scientific principles and theories.4. Maintains substantial knowledge of state-of-the-art principles and theories.5. Develops advanced analytical models and systems and provides solutions and analyses to support strategic and tactical decisions.6. Adheres to University and unit-level policies and procedures and safeguards University assets.This list of duties and responsibilities is not intended to be all-inclusive and may be expanded to include other duties or responsibilities as necessary.CORE QUALIFICATIONSEducation:Doctorate degree in relevant field requiredExperience:No previous experience requiredCertification and Licensing:Refer to department description for applicable certification requirementsKnowledge, Skills and Abilities:

• Learning Agility: Ability to learn new procedures, technologies, and protocols, and adapt to changing priorities and work demands.

• Teamwork: Ability to work collaboratively with others and contribute to a team environment.

• Technical Proficiency: Skilled in using office software, technology, and relevant computer applications.

• Communication: Strong and clear written and verbal communication skills for interacting with colleagues and stakeholders.

This is a core job profile description and is not reflective of all duties that may be assigned to a specific position in each individual department. The above statements are intended to describe the general nature and primary responsibilities of this core job profile. Specific duties and tasks may vary based upon departmental needs. Other duties may be assigned to the above consistent with the knowledge, skills, and abilities required for the job.

Department Specific Functions

The Post Doctoral Associate will join the research program of Nicholas Borja, MD, at Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine. The position applies bioinformatics and statistical genomics to investigate mechanisms of cancer susceptibility, genotype–phenotype correlations, and biomarkers for cancer risk and early detection. Active projects include exploring the molecular etiologies of multiple primary cancers, methods to distinguish constitutional mosaicism from clonal hematopoiesis, and validation of novel gene-disease associations.

• Develop, validate, and maintain reproducible pipelines for short-read and long-read DNA sequencing and RNA sequencing, from raw data processing and quality control through variant detection, annotation, and biological interpretation.

• Integrate germline and tumor sequencing to investigate cancer susceptibility, including structural variation, constitutional mosaicism, clonal hematopoiesis, loss of heterozygosity, and mutational signatures.

• Analyze RNA data to evaluate gene expression, aberrant splicing, gene fusions, and the functional consequences of candidate genomic variants; incorporate DNA methylation and other molecular data where relevant.

• Construct and evaluate polygenic risk scores and investigate genotype–phenotype relationships using institutional cohorts and large genomic datasets, accounting for ancestry and relevant clinical and environmental factors.

• Contribute to studies of cancer early detection assays through analysis of sequencing data, evaluation of genomic and epigenomic biomarkers, and assessment of assay performance.

• Collaborate with clinical investigators and institutional bioinformatics teams to develop research questions, interpret findings, prepare manuscripts and grant applications, and mentor trainees.

• Maintain documented, version-controlled workflows and secure data practices.

Department Specific Qualifications

Education: Ph.D. in bioinformatics, computational biology, genomics, human genetics, biostatistics, computer science, or a related discipline.

Certification and Licensing:

Not applicable

Experience:

Doctoral or postdoctoral research experience analyzing high-throughput sequencing data, with a record of first-author publications. Experience with long-read sequencing data, tumor-normal somatic variant analysis, or germline variant interpretation is strongly preferred. Familiarity with cloud-based analysis of controlled-access datasets (e.g., dbGaP, All of Us) and with reproducible workflow development is also desirable. Prior work in cancer genetics or hereditary cancer susceptibility is an advantage but is not required.

Knowledge, Skills and Attitudes:

• Proficiency in Python and/or R and in Linux shell scripting, with working knowledge of a workflow manager and containerization.

• Working knowledge of standard genomic file formats (FASTQ, BAM/CRAM, VCF, BED) and of tools for alignment, variant calling, structural variant detection, and phasing.

• Familiarity with variant annotation and interpretation resources and with ACMG/AMP variant classification principles.

• Sound statistical skills, including regression modeling, multiple testing correction, and diagnostic accuracy metrics; experience with DNA methylation or other epigenomic data is a plus.

• Commitment to reproducible research practices, including version control, documentation, and transparent reporting of methods.

• Ability to communicate computational findings clearly to clinical and non-computational audiences, and to write effectively for publication.

• Ability to work independently while contributing to a collaborative, clinically embedded research team

The University of Miami offers competitive salaries and a comprehensive benefits package including medical, dental, tuition remission and more.

UHealth-University of Miami Health System, South Florida's only university-based health system, provides leading-edge patient care powered by the ground breaking research and medical education at the Miller School of Medicine. As an academic medical center, we are proud to serve South Florida, Latin America and the Caribbean. Our physicians represent more than 100 specialties and sub-specialties, and have more than one million patient encounters each year. Our tradition of excellence has earned worldwide recognition for outstanding teaching, research and patient care. We're the challenge you've been looking for.

The University of Miami is an Equal Opportunity Employer. Applicants and employees are protected from discrimination based on certain categories protected by Federal law.

Job Status:

Full time

Employee Type:

Staff

The mission of the University of Miami is to transform lives through education, research, innovation, and service. A vibrant and diverse academic and healthcare community, the University of Miami and the University of Miami Health System ("UHealth") have rapidly progressed to become one of the nation’s top research universities and academic medical centers in the nation.

The University comprises 12 schools and colleges serving undergraduate and graduate students in more than 350 majors and programs. Visit welcome.miami.edu/about-um to learn more about our points of pride.

The University ranks No. 55 on U.S. News & World Report’s 2022 Best Colleges list and ranked No. 49 in the 2022 Wall Street Journal/Times Higher Education College Rankings.

Bascom Palmer Eye Institute is ranked the #1 eye hospital in the USA and offers some of the nation's premiere eye doctors to treat every eye condition for adults. Sylvester Comprehensive Cancer, part of the Miller School of Medicine, received the prestigious National Cancer Institute designation in 2019.

The University of Miami and UHealth have also ranked among the Forbes Best Employers and Best Employers for Women on several occasions, most recently in 2022.

With more than 17,000 faculty and staff, the University strives for excellence, and is driven by a powerful mission to transform and impact the lives of its students, patients, members of the community, and people across the globe.

The University of Miami is an Equal Opportunity Employer. Applicants and employees are protected from discrimination based on certain categories protected by Federal law.