Sign up to access all features of our service.
  • Job search
  • Favorites
  • Create a CV
    New
  • Salaries
  • Subscriptions

Automation Engineer

Merge Labs, Inc.

Merge Labs Automation Engineer

Merge Labs is a frontier research lab with the mission of bridging biological and artificial intelligence to maximize human ability, agency and experience. We're pursuing this goal by developing fundamentally new approaches to brain-computer interfaces that interact with the brain at high bandwidth, integrate with advanced AI, and are ultimately safe and accessible for anyone to use.

Merge is tackling some of the most audacious problems in molecular engineering, synthetic biology and neuroscience. Our Research Platform Team builds the experimental capabilities needed to solve these problems with very high speed and rigor. The instruments and pipelines the team builds accelerate molecular assembly, protein expression, mammalian cell culture, advanced microscopy, sequencing, as well as some very unusual custom methods. The team collaborates with program teams to establish and streamline these capabilities, automate wherever it makes sense to do so, and integrate with our data science and machine learning pipelines. We come up with creative approaches to greatly increase throughput and continuously innovate.

About the role

As an Automation Engineer, you will build automation pipelines to enable key research programs to move as quickly as possible. The role will leverage your existing technical and scientific expertise while requiring you to rapidly learn new scientific domains and develop new experimental capabilities. You will collaborate closely with program leads, project scientists, data scientists and engineers to co-design, implement and scale research pipelines. You will lead and perform work as an individual, and may recruit additional team members as needed to support it.

In this role, you will:

  • Partner with program leads and project scientists to define experimental automation needs and key approaches.
  • Apply biological context and experimental understanding to guide automation strategy and execution.
  • Scope, acquire, build, program and validate instrumentation and software and teach project teams to use them.
  • Own the quality, reliability, and integrity of data produced by automated pipelines, including defining and integrating appropriate QC checkpoints.
  • Collaborate with data science/ML engineers to integrate metadata tracking, computational design, and analysis into experimental pipelines.
  • Collaborate with electrical, mechanical and software engineers to build custom setups.
  • Conceive, design, and validate creative automation strategies to improve experimental throughput.
  • Serve as an integral member of research project teams and contribute your insights to project design, execution and analysis.

You might thrive in this role if you:

  • Have a background in engineering, robotics or similar field with extensive experience in biology, or a background in biology or bioengineering with extensive experience in automation engineering.
  • Have developed high throughput experimental pipelines involving mammalian cell culture, microscopy, molecular assembly, next-generation sequencing or protein engineering.
  • Have built unusual setups that required custom components that you couldn't get off the shelf.
  • Love getting your hands dirty with equipment setup, code writing, biological experiments and data analysis — whatever is needed.
  • Love learning new science and developing new capabilities.
  • Have worked in a fast-paced biotech/techbio, ideally startup, environment and loved it.
  • Have high agency to initiate and drive efforts, constantly ideate and look to make improvements.
  • Have strong communication skills and enjoy collaborating with researchers to help them accelerate their projects.
  • Have come up with creative or unexpected solutions to tricky problems.

If you're excited about this role but don't meet every qualification, please apply. As we build, we're hiring for complementary strengths to form a high-impact team. Merge Labs does not discriminate on the basis of race, color, religion, national origin, age, sex, sexual orientation, gender, gender identity, gender expression, marital status, physical or mental disability, medical condition, genetic information, family status, ancestry, citizenship, U.S. military (state and federal) and veteran status, or any other legally protected status. It is our intention that all applicants be given equal opportunity and that selection decisions are based on job related factors. We are an equal opportunity employer.

Pursuant to the San Francisco Fair Chance Ordinance, we will consider for employment qualified applicants with arrest and conviction records.

We are committed to providing reasonable accommodations to applicants with disabilities, and requests can be made by emailing View email address on click.appcast.io.

Vacancy posted 4 days ago
Similar jobs that could be interesting for youBased on the Automation Engineer in San Francisco, CA vacancy
  • $165k - $185k

     ...about the final cup; it's about the experience, the ritual, and the people who make it all happen. We're looking for an Automation Engineer (CI/CD, Firmware, Mobile, Backend) to support hardware product development and testing. This role is based in our office... 
    Suggested
    Work at office
    Local area

    FELLOW

    San Francisco, CA
    1 day ago
  • $130k - $165k

     ..., emails, and spreadsheets-so that forward-thinking teams can automate the work they thought would always be manual. Teams at fast...  ...Parabola gives teams the power to automate it-all without needing engineering support. Parabola is backed by OpenView Partners, Matrix... 
    Suggested
    Work at office

    Parabola

    San Francisco, CA
    3 days ago
  •  ...Leads efforts to establish, define, maintain and communicate automation architecture guidelines, principles, standards and best practices...  ...across all products. Collaborates with Integration engineers, to create automation best practices. Designs and deploys... 
    Suggested
    Contract work
    Work experience placement

    SGA

    San Francisco, CA
    11 hours ago
  •  ...team of mostly former founders (including two YC alumni). We're engineering-heavy, operate with minimal bureaucracy and high autonomy,...  ...sustainable intensity. About You You're obsessed with automating repetitive tasks — your first instinct when you see a manual... 
    Suggested
    Work at office
    Local area
    Remote work
    Work from home
    Relocation
    Flexible hours

    Metriport

    San Francisco, CA
    1 day ago
  •  ...We are seeking a highly skilled Senior Systems Engineer to lead the architecture, development, and automation of our complex system environments. In this role, you will bridge the gap between traditional integration middleware and modern cloud infrastructure, leveraging... 
    Suggested
    Temporary work

    AllSTEM Connections

    San Francisco, CA
    1 day ago
  • $74.04k - $148.08k

     ...Test Automation Engineer (Pytest) - Automotive At Capgemini Engineering, the world leader in engineering services, we bring together a global team of engineers, scientists, and architects to help the world's most innovative companies unleash their potential. From autonomous... 
    Permanent employment
    Full time
    Contract work
    Local area

    Capgemini

    San Francisco, CA
    2 days ago
  •  ...and test design, and lead a group of testers Knowledgeable on tools like Tosca, Selenium Expertise in creating maintaining automation frameworks and scripts Experience working with different frameworks like Keyword, Data Driven and Hybrid. Ability to multi-... 

    Purple Drive

    San Francisco, CA
    1 day ago
  • Automation Engineer page is loaded## Automation Engineerlocations: Kimball Electronics Indianapolistime type: Full timeposted on: Posted Yesterdayjob requisition id: R2026423### *We are committed to providing reasonable accommodations for individuals with disabilities in... 
    Contract work
    Temporary work
    Local area
    Visa sponsorship

    Kimball Electronics

    San Francisco, CA
    1 day ago
  • A cutting-edge AI startup is seeking a Strategy & Operations Engineer to enhance efficiency across the organization. This role focuses on eliminating manual processes by creating scalable automation and tools. Candidates should have strong software engineering skills, experience... 

    Happyrobot Inc.

    San Francisco, CA
    2 days ago
  • $95k - $140k

    A leading tech company in San Francisco is seeking a Sales-focused GTM Engineer. This role involves building and optimizing systems for sales automation, configuring Salesforce, and designing AI-powered workflows. The ideal candidate has over 2 years of experience in sales... 

    Loophq

    San Francisco, CA
    1 day ago
  • $109.34k - $164.01k

     ...for unparalleled reliability Advanced Materials and Joining - Engineering polymer and metal joining solutions for optimally performing...  ...the development and implementation of process control and automation systems for new equipment and manufacturing processes. Key responsibilities... 
    Local area
    Worldwide

    Element Solutions Inc

    San Francisco, CA
    2 days ago
  • $42 - $52 per hour

     ...Formic is on a mission to reshape American manufacturing by making automation accessible to every factory. As labor constraints rise, costs...  ...applications. About the role: As Controls & Automation Engineer, you will own advanced technical support and the long-term reliability... 
    Full time
    Temporary work
    Local area
    Remote work
    Home office
    Flexible hours
    Shift work

    Blackhornvc

    San Francisco, CA
    1 day ago
  • A leading energy solutions company in San Francisco seeks a skilled Controls / Automation Engineer to optimize manufacturing automation systems. The role requires strong technical skills, including PLC programming and problem-solving in a collaborative environment. Candidates... 
    Full time

    Franklin Whole Home

    San Francisco, CA
    3 days ago
  • $181.1k - $318.4k

     ...All of this is driven by a world-class vertically integrated engineering team spanning RF/Analog architecture and design, Systems/PHY/...  ...Description In this role, you will focus on delivering the automation frameworks used by Wireless SoC RF integration and validation... 
    Relocation

    Apple Inc.

    San Francisco, CA
    1 day ago
  • A leading technology company in San Francisco is seeking a senior engineer to lead the automation framework for wireless SoC RF integration. Candidates should have a BS and significant industry experience, along with strong skills in software development and test automation... 

    Apple Inc.

    San Francisco, CA
    3 days ago
  • Test Automation Engineer What You'll Do Design, develop, and execute automation scripts Identify, record, document thoroughly, and track bugs Perform thorough regression testing when bugs are resolved Liaise with internal teams (e.g., developers and product managers) to... 
    Work experience placement

    Antler

    San Francisco, CA
    4 days ago
  • $54.3k - $130k

    A leading engineering services firm is seeking a CAD Engineer in California to design automated mobile heavy equipment. The successful candidate will have a Bachelor’s degree in Mechanical Engineering and 1 to 4 years of relevant experience. Key responsibilities include... 

    Capgemini Engineering

    San Francisco, CA
    4 days ago
  •  ...data movement technology company is looking for a Senior GTM Engineer in San Francisco. The role involves building systems and workflows...  ...understanding of Salesforce and comfort using AI tools for automation. This hands-on technical role demands ownership, resourcefulness... 

    Airbyte

    San Francisco, CA
    2 days ago
  • An innovative tech startup is looking for a GTM Engineer to enhance automated outbound prospecting systems. You'll integrate technical creativity with revenue generation, collaborating directly with RevOps and Sales to optimize workflows. Candidates should have 1-3 years... 

    Dust

    San Francisco, CA
    2 days ago
  • $140k - $180k

     ...Senior Launch Automation Engineer Astra's mission is to improve life on Earth from space by creating a healthier and more connected planet. Today, Astra offers one of the lowest cost-per-launch dedicated orbital launch services, and one of the industry's leading flight... 

    ASTRA

    San Francisco, CA
    1 day ago
  • $167.4k - $204.1k

     ...rejuvenation and resilience. By designing and scaling sophisticated automated systems, you will enable our scientists to translate deep...  ...: Minimum Qualifications Education: BS/MS/PhD in Engineering, Biochemistry, Molecular Biology, Cell Biology, Genetics or related... 
    Contract work
    Local area

    Altos Labs

    San Francisco, CA
    4 days ago
  • $120k - $183k

     ...Systems Engineer, CX Automation Team Austin | Chicago | New York City | Salt Lake City | San Francisco Gong harnesses the power of AI to transform how revenue teams win. The Gong Revenue AI Operating System unifies data, insights, and workflows into a single, trusted... 
    Remote work
    Work from home
    Flexible hours

    Gong.io

    San Francisco, CA
    1 day ago
  •  ...build for the long term. About the role: Samsara's Automation team enables fast, high-quality software releases by building...  ...go. You believe customers are more than a number: Samsara engineers enjoy a rare closeness to the end user and you will have the opportunity... 
    Full time
    Remote work
    Flexible hours

    Samsara

    San Francisco, CA
    11 hours ago
  • $187k - $260k

     ...per week required in the office. About the role: Most "automation" roles are stuck in the browser. At Samsara, we operate where...  ...'s critical infrastructure moving. Samsara's Automation Engineering team uses cutting-edge engineering processes and data analysis... 
    Full time
    Work at office
    Remote work
    Flexible hours
    3 days per week

    Samsara

    San Francisco, CA
    1 day ago
  • $146.4k - $235.38k

     .... What you'll do Docusign has a dedicated Intelligent Automation Center of Excellence (CoE) that delivers enterprise-grade AI and...  ...AI/Document Intelligence. As a Senior Intelligent Automation Engineer, you will be a key contributor in scaling Docusign's... 
    Contract work
    Work at office
    Local area
    Remote work
    2 days per week

    DocuSign

    San Francisco, CA
    5 days ago
  • $159k - $175k

     ...Automation Engineer For Safety Systems Berkeley Lab's Engineering division is hiring an Automation Engineer for Safety Systems to design, develop, and lead software for Personnel Protection Systems (PPS) that safeguard researchers and staff working with ionizing and... 
    Full time

    Berkely Lab

    San Francisco, CA
    1 day ago
  •  ...to solve our customers’ unique challenges. Through intelligent automation, we give factories newfound flexibility, scalability, and...  ...speak with you. ABOUT THE ROLE   As an Automation Controls Engineer you will be designing and developing automated solutions, choosing... 

    Bright Machines

    San Francisco, CA
    19 days ago
  •  ...difference. Your role and responsibilities As a Customer Success Engineer, you will design viable client solutions by leveraging current...  ...• Technical Portfolio Knowledge: Experience working with the Automation APP INT portfolio (WebMethods, Sterling B2Bi, Connect:Direct,... 

    IBM

    San Francisco, CA
    6 days ago
  • A global consulting firm is looking for a Senior Automation Engineer in San Francisco, California. This role involves guiding the technical design of BAS/BMS/PLC systems, managing projects, and ensuring design quality. The ideal candidate will have a strong engineering... 

    Stantec Consulting International Ltd.

    San Francisco, CA
    3 days ago
  • A fast-paced aerospace startup in the Bay Area seeks a Senior Launch Automation Engineer to develop systems for orbital rocket launches. You will own algorithms and software for propellant loading and monitor live countdowns in a collaborative team environment. Ideal candidates... 

    Darwin Recruitment

    San Francisco, CA
    4 days ago

Do you want to receive more vacancies?

Subscribe and receive similar vacancies to Automation Engineer. Be the first to apply!