Director/Senior Director, Molecular Discovery
$202.4k - $323.4kLila Sciences
Director/Senior Director, Molecular Discovery Cambridge, MA USA; London, UK; San Francisco, CA USA The Director, Molecular Discovery is responsible for ensuring our autonomous science platform reliably and repeatedly delivers validated small-molecule drug candidates against designated targets at increasing speed. The platform generates and tests hypotheses at superhuman scale, and you ensure that process translates into real, high-quality compounds that advance toward the clinic. This role leans heavily into the AI and computational side of our workflow: you will be accountable for throughput, quality, and the operational health of the discovery engine, working hand-in-hand with AI scientists, computational chemists, and platform engineers to diagnose bottlenecks, close feedback loops, and continuously improve how the platform performs. What You'll Be Building Own small molecule discovery programs against assigned targets, from hit identification through lead optimization and candidate nomination. Serve as the accountable leader for discovery output setting and hitting timelines, quality benchmarks, and throughput targets across active programs. Operate as the primary interface between the autonomous science platform and drug discovery decision-making, ensuring that what the platform produces meets the bar for potency, selectivity, ADMET properties, and developability. Collaborate daily with AI/ML, robotics, and software engineering teams to close the loop between computational predictions and experimental results, driving continuous improvement of the platform's predictive accuracy and experimental efficiency. Architect the components of each discovery program end to end, specifying the required assays, building or sourcing the right capabilities, and managing the scientific staff needed to execute. Define and enforce the quality standards, assay cascades, and decision criteria that govern how compounds progress through the pipeline. Facilitate relationships with CROs and external partners for specialized studies (e.g., in vivo pharmacology, safety pharmacology, DMPK) that sit outside the automated platform. Provide drug discovery expertise to Lila's product team for commercial partnerships, translating platform capabilities into credible value propositions for pharma and biotech collaborators. What You'll Need to Succeed Ph.D. in medicinal chemistry, computational chemistry, chemical biology, or a closely related discipline. 12+ years of experience in small molecule drug discovery from the computational, medicinal chemistry, or program leadership side with at least 5 years in a senior role closely involved in advancing compounds from hit-to-lead through candidate selection. Demonstrated involvement in programs that delivered clinical candidates, with enough proximity to compound progression decisions to own them whether from the computational, medicinal chemistry, or program leadership side. Deep fluency in medicinal chemistry principles, you may not have practiced bench medchem, but you understand SAR, synthetic tractability, and the multiparameter tradeoffs at the core of lead optimization (potency, selectivity, ADMET, PK, safety) well enough to guide them or define systematic decision frameworks for them. Operational mindset, experience running discovery programs with clear metrics, milestones, and accountability structures, and a comfort level with managing throughput and efficiency alongside scientific quality. Strong working knowledge of ADMET, DMPK, and the data packages required to advance a candidate to IND-enabling studies. Fluency with AI/ML-driven molecular design approaches (generative chemistry, molecular property prediction, free energy methods, active learning) and the practical judgment to know when computational output is actionable and when it needs experimental validation. You don’t need to build models, but you must be a credible, hands-on collaborator with the scientists who do. Effective communicator who can translate complex scientific and operational status into clear updates for leadership. Bonus Points For Direct experience with automated, high-throughput, or closed-loop discovery environments (e.g., self-driving labs, robotic synthesis and screening platforms), you've seen what it takes to make these systems produce real drug discovery output, not just proof-of-concept demos. Experience applying computational chemistry or cheminformatics in a hands-on capacity, not just consuming model outputs, but contributing to how molecular design hypotheses are generated, scored, and prioritized. Experience building or scaling a discovery operation from early stage, standing up assay cascades, workflows, team structures, and vendor relationships without inheriting a mature infrastructure. Background across multiple therapeutic areas, giving you breadth in target biology and the flexibility to work across a diverse portfolio. Process-oriented thinking: you instinctively look for ways to measure, standardize, and improve how work gets done, without letting process become bureaucracy. Compensation We offer competitive base compensation with bonus potential and generous early-stage equity. Your final offer will reflect your background, expertise, and expected impact. U.S. Benefits. Full-time U.S. employees receive a comprehensive benefits program including medical, dental, and vision coverage; employer-paid life and disability insurance; flexible time off with generous company wide holidays; paid parental leave; an educational assistance program; commuter benefits, including bike share memberships for office based employees; and a company subsidized lunch program. International Benefits. Full-time employees outside the U.S. receive a comprehensive benefits program tailored to their region. USD salary ranges apply only to U.S.-based positions; international salaries are set to local market. Expected Base Salary Range
$202,400 - $323,400 USD
About LILA Lila Sciences is building Scientific Superintelligence™ to solve humankind's greatest challenges. We believe science is the most inspiring frontier for AI. Rather than hard-coding expert knowledge into tools, LILA builds systems that can learn for themselves. LILA combines advanced AI models with proprietary AI Science Factory™ instruments into an operating system for science that executes the entire scientific method autonomously, accelerating discovery at unprecedented speed, scale, and impact across medicine, materials, and energy. Learn more at Guided by our core values of truth, trust, curiosity, grit, and velocity, we move with startup speed while tackling problems of historic importance. If this sounds like an environment you'd love to work in, even if you don't meet every qualification listed above, we encourage you to apply. Lila Sciences iscommitted to equal employment opportunityregardless of race, color, ancestry, religion, sex, national origin, sexual orientation, age, citizenship, marital status, disability, gender identity or Veteran status. Information you provide during your application process will be handled in accordance with our Candidate Privacy Policy . #J-18808-Ljbffr Lila Sciences- Altoslabs in San Francisco is seeking a Structural Biology Senior Scientist to lead research on molecular mechanisms of disease related to aging and... ...collaborating with cross-functional teams on innovative drug discovery. The ideal candidate must have a PhD and over 6 years...MolecularSenior
- Lila Sciences seeks a Director/Senior Director of Molecular Discovery to lead autonomous, end-to-end small molecule discovery programs in a multi-site setting. You will ensure the discovery platform delivers validated candidates with high potency, selectivity, and favorable...Molecular
- Lila Sciences in Cambridge, MA seeks a Director, Molecular Discovery to lead autonomous discovery programs from hit identification through candidate nomination, partnering with AI/ML, robotics, and software teams to maximize speed and quality. The role emphasizes throughput...Molecular
$109.2k - $140k
...are currently seeking a highly capable and motivated Senior Research Associate to join our Drug Discovery team. In this role, your primary focus will be... ...Who You Are Required Qualifications BS or MS in Molecular Biology, Cell Biology, Biochemistry, Bioengineering...MolecularSeniorContract workLocal areaFlexible hours$163.5k - $281.6k
...DevelopmentPosted Date: 2026-06-16At Lilly, we unite caring with discovery to make life better for people around the world. We are a... ...determined to make life better for people around the world.Position: Molecular Pharmacology Lead in South San Francisco, CAReports to: Head...MolecularSeniorImmediate startFlexible hours- Dawar Consulting, Inc. seeks a Scientist III (Immunology Discovery) in South San Francisco to advance understanding of intracellular pathways... ...inflammation. This is a hands-on laboratory role driven by molecular biology, biochemistry and cellular immunology to validate...MolecularSenior
- Amgen invites applications for a Senior Scientist, Target Discovery & Biology - Functional Genomics in South San Francisco. You will join the Target... ...degrees (PhD/MD/PharmD) or equivalent, with strong molecular biology and cell engineering experience and the ability...MolecularSenior
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$251k - $295k
...signaling pathway. The Opportunity We are seeking a Senior Machine Learning Scientist to help accelerate drug discovery through advanced analytics and artificial... ...structure and screening data. Structural biology and molecular simulation outputs. Collaborate with Research...MolecularSeniorFull timeLocal area- Genentech is seeking a Scientist 3 to advance target discovery through cutting-edge genomics and molecular engineering. You will design and apply functional genomics read-outs, model systems, and imaging to study immune-mediated diseases at scale. The role emphasizes technology...MolecularSenior
$193.5k - $338.8k
Director/Sr. Director/Exec. Director Computational Chemistry, Advanced Molecular Design Eli Lilly and Company | Posted Mar 13 | Full-time Position Summary Lilly’s Advanced... .... We are looking for experienced drug discovery experts who will apply cutting‑edge computational...MolecularSeniorFull timeWork at officeFlexible hours$167.4k - $310.8k
...computational sciences are transforming drug discovery and development. Roche’s Research and... ...(ML) techniques. We are seeking a Senior or Principal Machine Learning Scientist... ...learning systems.PreferredExperience with molecular modalities (e.g., protein sequences, chemical...MolecularSeniorFull timeLocal areaWorldwideRelocation package$168.1k - $312.3k
...computational sciences are transforming drug discovery and development. Roche’s Research and... ...projects. We're looking for a talented Senior Scientist who combines strong technical... ...teamsSupport the continuation and evolution of our molecular assessment research efforts in...MolecularSeniorFull timeLocal areaWorldwide$71.25k - $187k
...waiting. We unite caring with discovery to help make life better for... ...us. JOB DESCRIPTIONPosition: Senior/Principal Scientist, Discovery... ...scientific lead and/or director, the successful candidate will... ...in biology, cancer biology, molecular biology, cell biology, biochemistry...MolecularSeniorFull timeH1bVisa sponsorshipWork visaFlexible hours$194.1k - $305.6k
...accomplished and highly collaborative Senior Director to provide scientific, operational, portfolio... ..., and people leadership to support discovery programs across multiple therapeutic... ...quality, timely data packages that support molecular design, candidate selection,...MolecularSeniorFull timeFor contractorsLocal areaRelocationVisa sponsorshipFlexible hoursShift work$87k - $117k
Senior Research Associate-Associate Scientist-Hight Throughput Antibody Discovery Contract High Throughput Discovery Senior Research Associate / Associate Scientist Function... ...execute and evolve our state-of-the-art molecular biology, NGS, and end-to-end automation...MolecularSeniorContract work$200k - $250k
The opportunity As a full-time Senior Scientist on the Machine Learning team, you will... ..., target identification, and early drug discovery. You will co-lead the development and evaluation... ...related to structural biology, molecular design, and drug discovery. Foundational...MolecularSeniorFull time$131.03k - $177.27k
...of patients while transforming your career. Senior Scientist - Experimental Protein Design for Target Discovery What you will do Let's do this. Let's change... ...for binder-target evaluation. Partner with molecular biology teams to establish construct generation...MolecularSeniorFull timeFlexible hours- ...transform the lives of patients while transforming your career. Senior Scientist, Target Discovery & Biology - Functional Genomics What You Will Do Let's... ...& Biology Preferred Qualifications Strong experience in molecular biology and cell engineering. Experience in complex and...MolecularSeniorFlexible hours
$131.4k - $206.8k
...company. -Our teams combine leading drug discovery capabilities and world-class R&D with... ...highly motivated, energetic, and skilled Senior Scientist to join the Discovery Biologics... ...hands-on laboratory skills in cell culture, molecular biology, high-throughput screening,...MolecularSeniorFull timeFor contractorsLocal areaRelocationVisa sponsorshipFlexible hoursShift work- Initial Therapeutics, Inc. is seeking a Target Validation Sr Director to shape and lead our Target Validation Unit within Research Biology... ...technologies to address complex biological problems in target discovery. The ideal candidate will have significant leadership...Senior
$265.41k - $312.46k
Amgen is seeking a Senior Director of Global Research - Target Discovery in South San Francisco. The role involves leading a team of about 25 scientists, driving innovative research in the field of target validation for therapeutic areas including oncology and inflammation...SeniorFlexible hours$260k - $350k
...structure‐based and computational drug discovery technology. The company’s platform combines... ...latest advancements in visualization of molecular interactions, computational chemistry,... ...Position Summary:Reporting to the Executive Director, Medical Affairs & Advocacy Engagement,...MolecularSeniorContract workRemote work- ...looking for an experienced mechanistic biologist to join our Discovery Biology Team. You will collaborate with our Platform and Chemistry... ...candidates will have a strong background in cellular and molecular biology, with significant experience in small molecule drug development...Molecular
- ...broader idea is bigger than phage therapy alone. We believe drug discovery is going to become much more computational over time. Tabula... ...-on bench role. We are looking for someone who is strong in molecular biology, excited by synthetic biology, and interested in helping...MolecularSeniorImmediate start
- ...information visit BBOTx.com. Who You Are We are seeking a Director or Senior Director, Translational Medicine to serve as BBOT’s... ...Translational Medicine Ph.D., M.D., or M.D./Ph.D. in oncology, molecular biology, pharmacology, or a related field Minimum 7 years...MolecularSenior
- ...of reasoning, generalizing, and driving discovery. Biomedical data is fragmented, noisy... ...training those systems. The Role As a Senior AI/ML Engineer, you will lead the design... .... Note: Prior experience with molecular or biomedical models is not required ....MolecularSeniorFull timeRemote workFlexible hours
- ...San Francisco, CA, is seeking a Scientist 1, Oncology | Drug Discovery, onsite five days per week. You will develop and optimize complex... ...include an MS degree in biology, biochemistry, cell/molecular biology, pharmacology, and/or toxicology plus at least one year...Molecular
$147k - $190k
...structure-based and computational drug discovery technology. The company's platform combines... ...latest advancements in visualization of molecular interactions, computational chemistry,... ...initiatives into business-relevant insights for senior leadershipDrive decision-making through...MolecularSenior- ...dynamic blood biomarkers and advanced analytics to accelerate drug discovery and improve patient outcomes. The role leads external... ...objectives. The ideal candidate holds an MD or PhD in Immunology, Molecular Biology, or Genomics and has a strong network across academia...Molecular
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