Research Scientist, Protein Design & Engineering
Dayhoff Labs
About us
We're reverse-engineering the origin of life - one of the great unsolved problems in science, and one we think AI finally makes tractable. Understanding this transition, from geochemistry to biochemistry, is what will let us orchestrate molecular networks and build systems that are more capable, adaptive, and efficient.
If we succeed, the applications are vast: catalysis, green synthesis, ab initio synthetic biology, programmable matter. Understanding and harnessing these processes could let ten billion of us thrive on this planet - and let life keep evolving beyond it.
We're a small, diverse team of AI engineers, computational scientists, and bench scientists. We hold ourselves to the rigor of a research institute, but we ship like an engineering firm. Global team, HQs in Cambridge, MA and London, UK.
The role
You'll engineer proteins to carry out useful chemistry, combining enzyme discovery, directed evolution, and experimental characterisation. You'll own the experimental cycle: choosing starting points, building variant libraries, developing screens, and establishing which changes improve function and why.
This is a hands-on role working closely with our computational and ML teams. You'll test designed proteins at the bench, use experimental results to guide subsequent rounds, and develop enzymes with the activity, selectivity, and stability needed for their intended application. There's no fixed screening pipeline to inherit - you'll help decide how we build it.
What you'll do
- Design and run protein engineering campaigns, from initial enzyme selection and library design through screening and characterisation of improved variants.
- Build and express variant libraries using site-directed, random, and combinatorial mutagenesis.
- Develop assays and high-throughput screens that reliably measure the properties we're trying to improve.
- Express, purify, and characterise proteins, measuring kinetics, substrate scope, selectivity, and stability under relevant reaction conditions.
- Work with computational scientists to test proposed designs, interpret successes and failures, and use the results to guide the next round.
- Develop enzymatic reactions and cascades, identifying how enzyme performance, cofactors, and reaction conditions affect overall productivity.
Essential experience
We're interested in the engineering campaigns you've run, the assays you've built, and what you learned from them. We care about:
- A track record of improving protein or enzyme function through directed evolution or rational engineering.
- Practical fluency in molecular biology, including cloning, library construction, mutagenesis, and recombinant protein expression.
- Experience developing and troubleshooting enzyme assays and screening workflows, with appropriate controls and follow-up validation.
- A solid grasp of enzyme mechanism, kinetics, and structure-function relationships, and the ability to use these to guide experiments.
- Experience independently taking projects through multiple design-build-test cycles and explaining what drove the results.
Highly preferred
- Experience with industrial biocatalysis or engineering enzymes for demanding reaction conditions.
- Experience integrating liquid handling and laboratory automation with high-throughput screening.
- Familiarity with biosensor-based screens, growth-based selection, or FACS.
- Experience testing computationally designed proteins and feeding experimental results back into design.
- Experience with enzyme cascades, fermentation, or transferring enzymatic processes from the bench to larger scales.
Logistics
This is a full-time, on-site role in Cambridge, MA. Compensation is highly competitive. We're also able to sponsor visas for the right candidate.
$126k - $181.5k
...recruiting a team of top-tier scientists to build this powerful and first... ...The successful candidate will design, construct, and functionally interrogate large protein variant libraries — linking... ..., antibody or protein display engineering, massively parallel reporter assays...Suggested$135k - $150k
...the role. We are seeking a Senior Scientist to drive key protein engineering workstreams within campaigns for our... .... You will play a key role in designing and executing protein engineering... ...project leads, or cross-functional research teams is preferred.Attributes for...Suggested$130.8k - $209.4k
The RoleModerna is seeking a Senior Scientist to support the AI-enabled design of de novo antibodies, binder and... ...technical role for an experienced protein designer who can build and operationalize... ..., as well as other members of Research, to advance novel candidates to the...SuggestedPermanent employmentFull timeWork from home$172k - $241k
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...intravenously delivered STX-003 is designed for tumor-targeted... ...motivated and innovative Senior Scientist of Protein Sciences to join our... ...that enable the discovery, engineering, and validation of protein... ...external partners, or translating research workflows into development...Full time- ...Cambridge, MA is seeking a highly motivated scientist to join the Molecular Profiling & Bioconjugation group in BioMedicine Design. The role involves hands-on execution of... ...bioconjugation experiments to develop innovative protein biotherapeutics, with a focus on...
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- ...evolve to advance medicine. The AI for Protein Engineering team designs models and systems turning design... .... We are hiring a machine learning scientist to design molecules on real... ...domain scientists, platform teams, and AI researchers. #J-18808-Ljbffr Lila Sciences
$176k - $304k
...Life Sciences AI, the AI for Protein Engineering team builds models and... ...that take a biologic from design specification to wet-lab validated... ...hiring a machine learning scientist to design molecules on real... ..., platform teams, and AI researchers to connect specialist protein...Full timeWork at officeLocal areaFlexible hours- Generate:Biomedicines seeks a machine learning scientist to lead the development of lab‑in‑the‑loop design systems for therapeutic proteins. You will focus on probabilistic ML,... ...deliver measurable impact. The role blends research and production within a highly collaborative...Work at office
- ...global biopharmaceutical company is seeking a highly motivated Scientist to join their Molecular Assessment and Profiling group in Cambridge... ..., excellent communication skills, and a proven track record in protein characterization. A comprehensive benefits package is offered,...
$115k - $161.67k
...5154 Job Family Research Workplace On-Site... ...drug discovery scientists. Our mission is to translate... ...biologics and multispecifics engineering, analytical... ...identification and optimization.Design, execute, and oversee... ...CDoT team members (protein sciences, RABIT binder...Full timeLocal areaFlexible hours- ...genetic medicines. It's team of driven scientists is making a mark in delivery of oligonucleotides... ...: Soufflé Therapeutics is growing its Protein Production team within Protein Science... ...Molecular biology experience: plasmid design and propagation Education BS or MS in a...Work at officeShift work
$82k - $92k
...is seeking a talented postdoctoral scientist motivated to push the boundaries of computational protein engineering and next-generation biotherapeutics design. In this role, you will develop... ...is expected and the scope of the research project is designed specifically for...For contractorsLocal areaRelocationVisa sponsorshipFlexible hoursShift work- ...medicines. It's team of driven scientists is making a mark in delivery... ...Optimization team within Protein Science to meet growing pre-clinical... ...and to evolve our ligand engineering platform with next-generation... ...and generative AI/ML biologics design. As an Associate Scientist II...Work at office
- ...opportunity is available for a Research Scientist specializing in AI and... .... Responsibilities include designing and implementing AI/ML methods... ...discovery, fine-tuning protein language models, and developing... ..., Biomedical or Chemical Engineering, with at least three years...Contract workRemote work
$66.8k - $124k
...Research Scientist, Lentiviral Vector Purification and Analytics Summary The Lentiviral Vector (... ...research activities. Support experimental design, data analysis, and troubleshooting.... ...level position. 1-3 years of experience in protein and/or viral vector purification. Hands...Relocation package- ...Research Scientist A Few Words About Us Integrated Resources, Inc is a... ...structural modeling and antibody engineering skills • The candidate is... ...program in parallel, design and execute antibody screening... ...cytometry • Experience with protein purification or AKTA is desired...
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$52 - $54 per hour
...Research Scientist Duration: 12+ Months Work Location: Cambridge MA Pay... ...Position Responsibilities Design, optimize, and set up high-... ...performing analysis of protein and DNA/RNA samples using a... ...research and early development engine, responsible for the discovery...Work at officeMonday to Friday$75k - $156k
...is an independent, nonprofit research and development company... ...space exploration to biomedical engineering, lives often depend on the solutions... ...teams of engineers and scientists work in a collaborative... ...Cable Harness and Interconnect Design Engineer who will play a key...Full timeLocal area$62.5k - $156k
...is an independent, nonprofit research and development company... ...space exploration to biomedical engineering, lives often depend on the solutions... ...teams of engineers and scientists work in a collaborative... ...Hardware Engineer specifies, designs, verifies, tests, and documents...Full timeLocal area- Job SummaryThe Senior Fixture Design Engineer is responsible for leading the design, development, validation, and deployment of manufacturing fixtures, assembly tooling, inspection fixtures, test fixtures, robotic end-of-arm tooling (EOAT), gauges, jigs, and production...Remote work
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Job Title: Senior ASIC Design EngineerJob Location: Santa Clara, CA or Boston, MACompensation: $150K - $250K base DOE plus equityRequirements... ...OverviewWe are seeking a highly skilled Senior ASIC Design Engineer to lead the design and development of advanced ASIC solutions....
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