Sign up to access all features of our service.
  • Job search
  • Favorites
  • Create a CV
    New
  • Salaries
  • Subscriptions

Associate Principal Scientist, Immunology Discovery

$142.4k - $224.1k
Full-time

MSD

Job Description

The Associate Principal Scientist will lead translational discovery activities through strong expertise in immune cell biology, human disease models, assay development, and data interpretation. The candidate will use primary immune cell systems, ex vivo patient samples, co-culture models, tissue analyses, and multi-omics datasets to build decision-enabling translational packages.

Key Responsibilities:

  • Design, execute, analyze, and interpret translational experiments to validate therapeutic targets in immunology, inflammation, and autoimmunity.

  • Develop disease-relevant in vitro, ex vivo, co-culture, and patient-derived tissue models.

  • Integrate mechanistic, pharmacology, transcriptomic, spatial, and biomarker data to connect target biology with disease pathophysiology and mechanism of action.

  • Generate decision-enabling data packages to support target prioritization, candidate progression, biomarker hypotheses, and patient selection.

  • Apply deep immunology expertise to design fit-for-purpose experiments and address key scientific questions.

  • Introduce innovative translational models, technologies, and analytical platforms.

  • Represent the function on project teams and communicate plans, progress, risks, and recommendations clearly.

  • Collaborate with discovery biology, translational medicine, biomarker sciences, data science, pharmacology, clinical development, academia, and CRO partners.

  • Mentor junior scientists through scientific guidance, experimental oversight, and data interpretation support.

  • Promote scientific rigor, high-quality documentation, inclusion, and a one-team mindset.

QUALIFICATIONS:

Education:

  • Bachelor's (with 13+ years), Master's (with 9+ years) or Ph.D. (with 5+ years) in immunology, cell biology, molecular biology, translational science, biomedical sciences or related discipline and relevant experience.

Required Experience and Skills:

  • Strong foundation in immunology, inflammation, autoimmunity, or related immune-mediated disease biology.

  • Demonstrated ability to independently design, troubleshoot, and interpret complex biological experiments.

  • Hands-on experience with primary cell culture, immune-cell assays, co-culture systems, tissue models, or ex vivo human sample platforms.

  • Ability to analyze biological, biochemical, immunological, and translational assay data and design follow-up studies.

  • Clear communication of complex science to multidisciplinary audiences.

  • Effective collaboration across functions and ability to contribute to multiple projects in a matrixed environment.

Preferred Experience and Skills:

  • Experience developing translational models of inflammatory or autoimmune disease, immune-cell activation, tissue inflammation, or immune-mediated pathology.

  • Expertise with flow cytometry, cytokine profiling, imaging, multiplex tissue analysis, spatial biology, transcriptomics, or related platforms.

  • Experience integrating human datasets with experimental models to define mechanism of action, pharmacodynamic biomarkers, responder hypotheses, or combination strategies.

  • Experience supporting drug discovery from target validation through candidate nomination or early clinical translation.

  • Familiarity with immune-mediated diseases such as IBD, rheumatoid arthritis, hidradenitis suppurativa, psoriatic disease, lupus, asthma, or atopic dermatitis.

  • Experience leading external collaborations or coordinating CRO work.

#EligibleforERP

Required Skills:

Autoimmune Diseases, Cell Biology, Cell Cultures, Immunology, Immunology Research, Immunotherapy, Inflammatory Diseases, Molecular Cell Biology, Translational Research

Preferred Skills:

Current Employees apply HERE

Current Contingent Workers apply HERE

US and Puerto Rico Residents Only:

Our company is committed to inclusion, ensuring that candidates can engage in a hiring process that exhibits their true capabilities. Please click here if you need an accommodation during the application or hiring process.

As an Equal Employment Opportunity Employer, we provide equal opportunities to all employees and applicants for employment and prohibit discrimination on the basis of race, color, age, religion, sex, sexual orientation, gender identity, national origin, protected veteran status, disability status, or other applicable legally protected characteristics. As a federal contractor, we comply with all affirmative action requirements for protected veterans and individuals with disabilities. For more information about personal rights under the U.S. Equal Opportunity Employment laws, visit:

EEOC Know Your Rights

EEOC GINA Supplement​

We are proud to be a company that embraces the value of bringing together, talented, and committed people with diverse experiences, perspectives, skills and backgrounds. The fastest way to breakthrough innovation is when people with diverse ideas, broad experiences, backgrounds, and skills come together in an inclusive environment. We encourage our colleagues to respectfully challenge one another’s thinking and approach problems collectively.

Learn more about your rights, including under California, Colorado and other US State Acts

The salary range for this role is

$142,400.00 - $224,100.00

This is the lowest to highest salary we in good faith believe we would pay for this role at the time of this posting. An employee’s position within the salary range will be based on several factors including, but not limited to relevant education, qualifications, certifications, experience, skills, geographic location, government requirements, and business or organizational needs.

The successful candidate will be eligible for annual bonus and long-term incentive, if applicable.

We offer a comprehensive package of benefits. Available benefits include medical, dental, vision healthcare and other insurance benefits (for employee and family), retirement benefits, including 401(k), paid holidays, vacation, and compassionate and sick days. More information about benefits is available at

You can apply for this role through (or via the Workday Jobs Hub if you are a current employee). The application deadline for this position is stated on this posting.

San Francisco Residents Only: We will consider qualified applicants with arrest and conviction records for employment in compliance with the San Francisco Fair Chance Ordinance

Los Angeles Residents Only: We will consider for employment all qualified applicants, including those with criminal histories, in a manner consistent with the requirements of applicable state and local laws, including the City of Los Angeles’ Fair Chance Initiative for Hiring Ordinance

Search Firm Representatives Please Read Carefully
Merck & Co., Inc., Rahway, NJ, USA, also known as Merck Sharp & Dohme LLC, Rahway, NJ, USA, does not accept unsolicited assistance from search firms for employment opportunities. All CVs / resumes submitted by search firms to any employee at our company without a valid written search agreement in place for this position will be deemed the sole property of our company. No fee will be paid in the event a candidate is hired by our company as a result of an agency referral where no pre-existing agreement is in place. Where agency agreements are in place, introductions are position specific. Please, no phone calls or emails.

Employee Status:

Regular

Relocation:

Domestic/International

VISA Sponsorship:

Yes

Travel Requirements:

10%

Flexible Work Arrangements:

Not Applicable

Shift:

1st - Day

Valid Driving License:

No

Hazardous Material(s):

n/a

Job Posting End Date:

10/11/2026

*A job posting is effective until 11:59:59PM on the day BEFORE the listed job posting end date. Please ensure you apply to a job posting no later than the day BEFORE the job posting end date.

Vacancy posted 4 days ago
Similar jobs that could be interesting for youBased on the Associate Principal Scientist, Immunology Discovery in San Diego, CA vacancy
  • $142.4k - $224.1k

     ...improving the lives of patients. The Discovery Immunology organization is developing and...  ...medical needs. We are seeking anAssociate Principal Scientistwith strong background in...  ...provide mentorship to less experienced scientists to ensure a culture of scientific... 
    Principal
    For contractors
    Local area
    Worldwide
    Relocation
    Visa sponsorship
    Flexible hours
    Shift work

    Merck & Co. , Inc.

    San Diego, CA
    23 hours ago
  • $115k

     ...lives by developing the medicines of tomorrow.Our Immunology team leads in the development of transformational...  ...the way. We are searching for the best talent for a Principal Scientist, Applied AI, in Immunology Discovery, to be in Spring House, PA, La Jolla, CA or... 
    Principal
    Full time
    Temporary work
    Local area

    Johnson & Johnson

    San Diego, CA
    2 days ago
  •  ...OverviewNeomorph is seeking an experienced drug discovery biologist with extensive experience...  ...and providing mentorship to junior scientists. Required QualificationsPhD with 6+...  ...Experience managing teams of one or more associate scientistsWhat we offer:Industry competitive... 
    Principal
    Summer holiday
    Local area
    Shift work

    Neomorph

    San Diego, CA
    1 day ago
  • $117k - $201.25k

     ...Johnson & Johnson company, is recruiting for a Principal Scientist, R&D Data, Data Science & Artificial Intelligence (DDSAI) - Immunology. This position will be located at one of...  ...Science, Translational Medicine, Discovery, Late Development, Market Access, Medical... 
    Principal
    Full time
    Temporary work
    Local area
    Remote work

    Johnson & Johnson

    San Diego, CA
    3 days ago
  •  ...several key therapeutic areas including immunology, oncology and neuroscience - and...  ...AbbVie is seeking a driven and innovative Associate Scientist II, in vitro Preclinical Development,...  ...mRNA-tLNP pipeline programs from early discovery through IND-enabling studies Execution... 
    Suggested
    Full time
    Temporary work
    Local area

    AbbVie Inc.

    San Diego, CA
    25 days ago
  • $114k - $228k

     ...work for diversity, working mothers, female executives, and scientists. The OpportunityThis position works out of our San Diego...  ...accessible, molecular-based solutions.   Position OverviewThe Associate Principal Bioinformatics Scientist is self-driven, working on... 
    Principal
    Work at office
    Worldwide
    Shift work
    Night shift

    Abbott

    San Diego, CA
    3 days ago
  • $150k - $220k

     ...undruggable targets in the oncology and immunology space. We prize scientific...  ...dynamic work culture where your ideas and discoveries are valued and will have an impact. We...  ...metabolite profiling, identification and associated enzymology of select projects. This position... 
    Principal
    Local area

    Vividion Therapeutics, Inc

    San Diego, CA
    9 days ago
  •  ...several key therapeutic areas including immunology, oncology and neuroscience - and...  ...YouTube. Job Description We seek a Principal Scientist II, Lipid Chemistry to join an experienced...  .... Collaborate with cross-functional discovery teams to translate in vitro and in... 
    Principal
    Full time
    Temporary work
    Work experience placement
    Local area

    AbbVie Inc.

    San Diego, CA
    a month ago
  • $184.06k - $223.04k

     ...including hematology, oncology, immunology, cardiovascular and...  ...data delivery and analysis and associated timelines by working with relevant...  ...with TM laboratory scientists and academic TLs to address...  ...Home Account.R1601688 : Senior Principal Scientist, Neuroscience, Clinical... 
    Principal
    Hourly pay
    Full time
    Summer work
    Live in
    Local area
    Remote work
    Flexible hours

    RayzeBio

    San Diego, CA
    1 day ago
  • $115.5k - $319.8k

     ...Associate or Full Professor (Ladder Rank) Immunology Faculty University of California San Diego Position overview Position title: Immunology Faculty  Salary range: The posted UC Salary scales set the minimum pay at the appointment as determined by appointment... 
    Full time
    Freelance
    Local area

    University of California San Diego

    La Jolla, CA
    29 days ago
  • $137k - $235.75k

     ...and recognize their merit.Job Function: Discovery & Pre-Clinical/Clinical DevelopmentJob...  ...way.Learn more at Purpose: The Senior Principal Scientist will be a key member of discovery...  ...preclinical and early clinical studies and the associated quantitative model-based analyses to... 
    Principal
    Full time
    Local area

    Johnson & Johnson

    San Diego, CA
    2 days ago
  • $102k - $128k

    JOB SUMMARYWe are seeking a motivated and hands-on Senior Associate Scientist I/II, Purification Sciences to support small-molecule drug discovery. This individual will perform chromatography-based purification, with a focus on preparative LC and preparative SFC, supporting... 
    Flexible hours

    Iambic Therapeutics

    San Diego, CA
    3 days ago
  • $96k - $120k

     ...SUMMARYWe are seeking a highly skilled and motivated Senior Associate Scientist to join the Chemistry team at Iambic Therapeutics headquarters...  ..., and software engineers throughout all stages of discovery, from hit identification and lead optimization through candidate... 
    Flexible hours

    Iambic Therapeutics

    San Diego, CA
    3 days ago
  • $144.4k - $216.6k

     ...technology and full automation to accelerate Vertex’s internal drug discovery pipeline. These instruments are tailored to specific project...  ...available.We are seeking an experienced and innovative Principal Scientist with expertise in optical design, microscopy, and functional... 
    Principal
    Full time
    Summer work
    Flexible hours

    Vertex Pharmaceuticals

    San Diego, CA
    3 days ago
  • $115k - $227k

     ...dignity of our employees and recognize their merit.Job Function: Discovery & Pre-Clinical/Clinical DevelopmentJob Sub Function:...  ...of the way. Learn more at We are seeking a highly motivated principal scientist to join our translational research team based in Spring House... 
    Principal
    Full time
    Local area
    Immediate start

    Johnson & Johnson

    La Jolla, CA
    4 days ago
  • $120k - $150k

     ...state-of-the-art drug discovery and development...  ...postdocs into leading edge scientists. Leveraging the...  ...team.POSITION TITLE: Principal Scientist (Protein Immunotherapy...  ...entry level Research Associates, with increased...  ...Strong background in Immunology with a proven publication... 
    Principal
    Full time
    Flexible hours

    Scripps Research

    San Diego, CA
    3 days ago
  • $176.2k - $277.3k

     ...Summary: We are seeking a Discovery Program Leader (DPL) to...  ...meetings focused primarily on immunology and oncology . This position...  ...and assess potential risks associated with therapeutic targets or...  ...experience as a non-clinical safety scientist (e.g. Toxicology, Pathology... 
    Principal
    Full time
    For contractors
    Local area
    Worldwide
    Relocation
    Visa sponsorship
    Flexible hours
    Shift work

    Merck & Co.

    San Diego, CA
    6 days ago
  • $151.33k - $183.37k

     ...are seeking an accomplished Principal Scientist to advance antibody...  ...initiatives within the Therapeutic Discovery Sciences Department on the...  ...engineering approaches in oncology, immunology, neuroscience, or other...  ...scientists and research associates in a team-based laboratory... 
    Principal
    Hourly pay
    Full time
    Summer work
    Live in
    Local area
    Remote work
    Flexible hours

    RayzeBio

    San Diego, CA
    4 days ago
  • $164.4k - $246.6k

    Job DescriptionVertex is seeking a Senior Principal Research Scientist, Medicinal Chemistry to provide scientific leadership in the design and optimization of small-molecule therapeutics across discovery programs. This role will play a critical part in advancing high-quality... 
    Principal
    Full time
    Summer work
    Flexible hours

    Vertex Pharmaceuticals

    San Diego, CA
    2 days ago
  • $152k - $190k

     ...proven track record of success in drug discovery. Candidates should be motivated to work...  ...knowledge of target protein degradation and associated modalities (molecular glues, PROTACS)...  ...TypeFull timeDepartmentScienceChemistryCompensationPrincipal Scientist$152K - $190K
    Principal
    Flexible hours

    Iambic Therapeutics

    San Diego, CA
    2 days ago
  • $71.25k - $187k

     ...26-05-18At Lilly, we unite caring with discovery to make life better for people around the...  ...for people around the world. The Immunology research group focuses on discovering innovative...  ...a highly motivated and dedicated scientist with knowledge and experience of cellular... 
    Principal
    H1b
    Flexible hours

    Eli Lilly and Company

    San Diego, CA
    4 days ago
  • JOB SUMMARYWe are seeking skilled scientists to join our Discovery Machine Learning group at Iambic Therapeutics. In this role, you will be a key player in applying advanced ML techniques to support our drug discovery efforts and will be part of drug discovery teams pursuing... 
    Flexible hours

    Iambic Therapeutics

    San Diego, CA
    23 hours ago
  • $156.9k - $214k

     ...neurological, psychiatric, endocrine and immunological disorders. The company's diverse...  ...treatments for tardive dyskinesia, chorea associated with Huntington's disease, classic congenital...  ...project teams to advance discovery programs to key milestones. Provides expertise... 
    Principal

    Neurocrine Biosciences

    San Diego, CA
    23 hours ago
  •  ...-based assays, e.g., LC-MS, IHC/IF, ctDNA, NGS, and other potential biomarker readouts. Lead translational research strategy from discovery through early clinical development. Partner with Clinical Development/Operations to integrate translational endpoints into Phase 1... 
    Principal
    Summer holiday
    Local area

    Neomorph

    San Diego, CA
    4 days ago
  • $176.2k - $277.3k

     ...Summary We are seeking a Discovery Program Leader (DPL) to represent...  ...focused primarily on immunology and oncology. This position...  ...and assess potential risks associated with therapeutic targets or...  ...experience as a non-clinical safety scientist (e.g. Toxicology, Pathology... 
    Principal
    For contractors
    Local area
    Worldwide
    Relocation
    Visa sponsorship
    Flexible hours
    Shift work

    MSD Malaysia

    San Diego, CA
    3 days ago
  • $131.59k - $159.45k

     ...changing. Those aren’t words that are usually associated with a job. But working at Bristol...  ...to join the Molecular Pharmacology discovery biology team at the Protein Homeostasis...  ...expected to be able to work as an independent scientist, but also extensively collaborate or... 
    Hourly pay
    Full time
    Temporary work
    Part time
    For contractors
    Summer work
    Live in
    Local area
    Remote work
    Flexible hours
    Shift work

    RayzeBio

    San Diego, CA
    23 hours ago
  • $108.5k - $201.5k

     ...California Novartis is seeking a highly motivated ADME scientist for a laboratory-based role supporting the discovery and early development of antibody–oligonucleotide...  ...this position is expected to range between: Principal Scientist I: $108,500 and $201,500 per year.... 
    Principal

    Research

    San Diego, CA
    a month ago
  • $169k - $185k

     ...transplant-related complications. Founded by pioneers in the discovery of Tr1 cells, Tr1X, Inc. is focused on developing durable,...  ...need. For more information, visit Position Summary The Principal Scientist, LNP Platform & Process Development (Scientist) is an experienced... 
    Principal
    Temporary work

    Tr1X

    San Diego, CA
    11 days ago
  • JOB SUMMARYWe are seeking a highly motivated, hands-on Research Scientist I/II with strong immunology training to join the Biology group and support small-molecule drug discovery programs at Iambic Therapeutics. The successful candidate will design and execute in vitro... 
    Flexible hours

    Iambic Therapeutics

    San Diego, CA
    3 days ago
  • $52k - $57k

     ...responsibility of the individual will be to assist in protein and other discovery reagents expression and purification, analytical assays of...  ..., to recruit, hire, train and manage highly qualified scientists to perform laboratory services using our client’s quality systems... 
    Full time
    Contract work
    Worldwide

    Eurofins USA PSS Insourcing Solutions

    San Diego, CA
    6 days ago

Do you want to receive more vacancies?

Subscribe and receive similar vacancies to Associate Principal Scientist, Immunology Discovery. Be the first to apply!