Principal Scientist, AI-Native Discovery (Large Molecules)
J&J Family of Companies
Principal Scientist, AI-Native Discovery (Large Molecules) Johnson & Johnson Innovative Medicine is recruiting for a Principal Scientist, AI-Native Discovery (Large Molecules) to join our In Silico Drug Discovery team. This position will be located in either Spring House, PA (preferred); Cambridge, MA; or San Diego, CA (La Jolla area) and may require some travel as needed. (No remote option.) We are seeking a creative, highly collaborative, and self-motivated Principal Scientist to join our In Silico Discovery (ISD), In Silico Biologics team. In this role, you will help shape the future of AI-native biologics discovery by integrating advanced AI, agentic workflows, predictive modeling, and computational design into Therapeutic Discovery programs. You will represent In Silico Discovery on cross-functional project teams, integrating broader ISD capabilities and AI-native approaches. The ideal candidate combines experience influencing cross-functional discovery programs with therapeutic development expertise and a passion for using AI to generate insights, inform experimental strategies, and improve discovery decisions. You will help build new ways of working that integrate human scientific judgment, machine intelligence, experimental data and computational methods, while leveraging capabilities from across ISD and the broader J&J technical community. This is an opportunity to join a diverse, global community of in silico scientists and contribute directly to the discovery of innovative medicines for patients. What You Will Do Partner closely with teams across In Silico Discovery to connect biologics discovery programs with relevant computational capabilities and AI-enabled approaches. Partner with Biologics Discovery and Therapeutic Area teams to apply AI-enabled computational design, analysis, and decision support in Therapeutic Discovery programs. Represent In Silico Discovery on cross-functional project teams and apply AI-enabled computational insights to support program strategy and decision-making. Apply predictive modeling, machine learning, generative approaches, agentic AI, structural modeling, and computational biology to support experimental strategy and biologic candidate design and optimization. Advance AI-native workflows that connect hypothesis generation, computational design, experimental testing, and model refinement to accelerate learning and decision-making. Evaluate emerging technologies and contribute scientific recommendations to internal development, acquisition, partnering, licensing, or M&A opportunities. Champion the responsible and scientifically rigorous adoption of AI and contribute to an innovative culture that values collaboration, experimentation, continuous learning, and knowledge sharing. Maintain awareness of advances in AI, computational biology, structural modeling, and biologics design. Contribute to Johnson & Johnson's external scientific presence through peer-reviewed publications, conference participation, and collaboration with external organizations. How You Will Make an Impact You will help define how AI becomes an integral part of biologics discovery, enabling new approaches to scientific learning and decision-making. By connecting human expertise, AI models, computational design, experimental workflows, and high-quality data, you will help create a more predictive, scalable, and adaptive discovery environment. Your work will contribute to faster learning cycles, stronger design decisions, and the advancement of differentiated biologic medicines for patients. Why Join Us Shape AI-native ways of working across biologics discovery. Apply emerging AI capabilities to meaningful therapeutic challenges. Work across computational science, experimental biology, data science, and drug development. Required Qualifications PhD in a relevant scientific or technical discipline and a minimum of 4 years of relevant drug discovery experience, including experience contributing to cross-functional discovery teams. Knowledge of biologics discovery, candidate optimization, and therapeutic development processes. Strong scientific leadership, communication, and stakeholder management skills, including the ability to organize and communicate complex data, models, and scientific concepts clearly to partners with diverse technical backgrounds. Demonstrated expertise in AI, machine learning, agentic AI, structural modeling, computational biology, or computational approaches for antibody design and optimization. Experience representing a computational function on cross-functional projects and integrating computational and experimental data to inform program strategy and scientific decisions. Hands-on experience with large-scale scientific data curation, aggregation, manipulation, integration, mining, and analysis across structured and unstructured data sources. Preferred Qualifications Experience in therapeutic target analysis, structural biology, antibody-antigen interaction modeling, computational protein design, and scientific data visualization. Experience with multimodal biological data, generative modeling, foundation models, AI agents, or iterative design-build-test-learn workflows. Experience developing, scaling, or adopting computational platforms and workflows in partnership with technology development teams. A strong publication record and demonstrated contributions to the discovery or advancement of preclinical or clinical candidates. Experience collaborating with academic institutions, biotechnology companies, technology partners, or contract research organizations. Experience evaluating emerging computational technologies or external scientific innovation opportunities. Experience influencing multidisciplinary discovery teams spanning computational and experimental functions. Influence both portfolio programs and the evolution of enterprise discovery capabilities. Contribute to a collaborative global scientific community focused on delivering innovative medicines to patients. J&J Family of Companies
$117k - $201.25k
...Principal Scientist role in AI-native biologics discovery within Johnson & Johnson's In Silico Drug Discovery team. The position integrates artificial intelligence, computational design, and predictive modeling into therapeutic discovery programs across three U.S. locations...Principal$168k - $252k
...accelerate the application of AI and agentic systems across drug discovery. Working at the... ...scientifically rigorous AI co-scientists that enhance compound... ...primary focus will be small-molecule drug discovery, the... ...technologies, including large language models, agentic...PrincipalFull timeSummer workRemote workFlexible hours2 days per week3 days per week- ...and agentic systems in small-molecule drug discovery. This role bridges... ...and engineering to develop AI-enabled workflows that enhance... ...to develop and deploy AI co-scientists supporting design, analysis,... ...~ Strong understanding of large language models, agentic systems...Principal
$168k - $252k
...seeking an accomplished Senior Principal Scientist with proven record of... ...methods and agentic AI systems for drug discovery. In this role, you will work... ...modalities with emphasis on small molecules to develop, test, and... ...technologies, including large language models, agentic...PrincipalFull timeSummer workRemote workFlexible hours2 days per week3 days per week- Pioneering Intelligence is seeking a Senior Principal Scientist to invent and build the next generation of evolutionary algorithms for autonomous... ...on Bayesian inference, reinforcement learning, optimization, and automated discovery. #J-18808-Ljbffr Pioneering IntelligencePrincipal
$142.5k - $256.5k
...accomplished and highly motivated Principal Scientist to join the Antibody Discovery team within Therapeutics... ...-based therapeutic molecules that enable new... ...bioinformatics, structural modeling, AI/ML‑enabled discovery... ...of interest, from native proteins to antibodies and...PrincipalPermanent employmentWork at officeWork from home$168k - $252k
...Vertex Pharmaceuticals seeks a Senior Principal Scientist to develop and deploy agentic AI systems for drug discovery. The role combines computational expertise with scientific... ...AI-enabled workflows that enhance small molecule and protein therapeutic discovery, requiring...Principal$119.7k - $222.3k
...of artificial intelligence (AI) enabled strategies to transform... .... Experience in late discovery into clinical development is... ...potentially includes small molecules, biologics/therapeutic proteins... ...strategy, to be considered for Principal Scientist II. 4+ years of experience...PrincipalFull time$208k - $286k
...autonomous system capable of exploring large scientific and computational... ...directions. We are looking for a Senior Principal Scientist to invent and build the next... ...optimization, and automated scientific discovery. You will help define how AI systems navigate vast spaces of...Principal$156.18k - $189.25k
...engine, responsible for the discovery and development of... ...Cambridge and Seattle, scientists focus on novel targets... ...experienced and talented Principal Scientist to join our... ...microfluidics Familiarity with large-scale oncology datasets... ...in bioinformatics, AI, and machine-learning...PrincipalHourly payFull timeSummer workLive inLocal areaRemote workFlexible hours- Axonis Therapeutics in Boston is seeking a Senior/Principal Scientist, DMPK to drive strategy from discovery through clinical development. You will collaborate with Chemistry and Toxicology teams to optimize ADME properties for CNS programs and lead human PK projections...Principal
$160k - $224k
...seeking an accomplished Principal Scientist to lead Target Binding... ...biotherapeutic discovery and development programs... ...proteins, and multispecific molecules.Here's how you will... ...Practical experience using AI-enabled or agentic... ...machine learning with large-scale experimentation,...PrincipalShift work$108.5k - $201.5k
...Principal Scientist As a Principal Scientist, you will lead and execute formulation development... ...formulation screening strategies for large-molecule therapeutics, with emphasis on mAbs... ...stakeholders across biologics discovery and technical development Partner...Principal$137k - $215.27k
...skilled cheminformatic scientist to join Takeda’s cheminformatics... ...chemistry, DMPK, and AI/ML, defining a roadmap... ...AI solutions for drug discovery, including autonomous... ...predictive models for molecule design and optimization... ...design knowledge from large-scale chemical and...Minimum wageLocal area- ...Bristol Myers Squibb seeks a Principal Scientist for its Discovery BioSciences Genomics team in Cambridge, MA. The role focuses on wet lab research using multi-omics approaches—genomics, functional genomics, and spatial transcriptomics—to advance oncology drug discovery...Principal
$170k - $205k
...accomplished, technically driven Sr. Scientist II/ Principal Scientist to join our... ...chemoproteomic target discovery and validation efforts, as... ...characterization, in support of our small molecule discovery portfolio. As a... ..., and interpretation of large biological datasets is...Principal- Sr. Scientist / Principal Scientist, Computational Chemistry About Superluminal... ...and accuracy of how small molecule medicines are created. The... ...of small molecule drug discovery with creativity and innovation... ...specifically in the context of large-scale virtual screening or...Principal
$148k - $208k
...Your Impact at LILA We're building a talent-dense, high-agency AI safety team at Lila that will engage all core teams within the... ...scientific superintelligence while retaining the core scientific discovery capabilities of the stack. The initial focus of this team will...PrincipalFull timeWork at officeLocal areaFlexible hours- ...most important technology and AI companies on their most transformational... ...they grow and compete, and AI-native companies building an entirely... ...a single engagement. As a Principal Director you are a true... ...from new product investments to large-scale infrastructure builds to...PrincipalFull timeLive inWork at officeLocal areaShift work
$116k - $182.27k
...Gastrointestinal and Inflammation (GI2) Drug Discovery Unit at Takeda is building a new team... ...medical needs. We seek a Research Scientist to join our biology and cross-functional... ...vitro assays to characterize small and large molecules for potency and mechanism of actionExperience...Minimum wageLocal area$185k - $230k
...evaluation of novel therapeutic targets, initiation of innovative drug discovery projects and maturing these through the early pipeline towards... ...ideation and maturation, preferred Experience in small molecule drug development paths, preferred. Strong knowledge and...PrincipalLocal areaFlexible hours$121.28k - $202.13k
...out more: Our approach to R&D Position Summary The successful candidate will join GSK’s oligonucleotide synthesis lab as a process discovery chemist, bridging early discovery-stage chemistry with the process rigor needed to reliably deliver in vivo study material. This...PrincipalFull timeLocal area- 1910 in Boston seeks an experienced computational chemist to lead drug discovery efforts. The ideal candidate will have a Ph.D. and extensive experience in quantum chemical methods and molecular dynamics simulations. This role involves collaboration across interdisciplinary...
$130.8k - $209.4k
...a highly motivated Senior Scientist to join the Antibody Discovery team within Therapeutics Research... ...-based therapeutic molecules that enable new treatment... ...protein or binder design, AI/ML-enabled design tools, or... ...protein of interest, from native proteins to antibodies and...Local areaWork from home$90k
Postdoctoral Researcher - Nanopore Proteomics and AI-Driven Single-Molecule Sensing Research & Development - Cambridge, Massachusetts, USA Join... ...fingerprinting, trapping, and characterization. Generate and analyze large-scale single-molecule datasets acquired from high-bandwidth...- ...opportunities for development and bench-to-bedside-to-bench translation. Experience in late discovery into clinical development is preferred. The scope of the role potentially includes small molecules, biologics/therapeutic proteins, antibody drug-conjugates, radioligand therapies...Principal
$115k - $215k
...industry-leading pipeline of oral small molecule degraders to provide a new generation of... ...targeted proteomics strategies that inform discovery, translational, and clinical-stage... ...discovery:Highly organized, solutions-oriented scientist with the ability to manage multiple...Principal$160k - $235k
...Sr. Scientist/Principal Scientist, Translational Research and Clinical Biomarkers (Immunology)... ...work across the organization with our Discovery, Data Science, and Clin Dev teams, helping... ...aid in decision making as we advance molecules into and through clinical development....Principal$117k - $201.25k
...dignity of our employees and recognize their merit. Job Function: Discovery & Pre-Clinical/Clinical Development Job Sub Function:... ...recognize their merit. We are searching for the best talent for a Principal Scientist, Animal Genetic Engineering - Antibody Discovery to be based...PrincipalContract workLocal areaImmediate start$146k - $236k
...ventures, harnessing recent advances in AI, machine learning, and data to accelerate... ...AI and Engineering teams, feeding field discoveries back as product requirements. The role owns... ...Translational breadth across drug modalities (small molecule, biologic, gene therapy, novel platforms)...Principal
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